CABS-dock: 1RV1-SGPPGLPGPIGLPGDPG

Project name: 1RV1-SGPPGLPGPIGLPGDPG

Status: done

submitted: 2025-08-25 08:34:33, status changed: 2025-08-25 13:32:03

Project settings

Protein sequence(s)	ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVV input pdb
Peptide sequence	SGPPGLPGPIGLPGDPG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.8212	2.67046	20.2428	101
cluster_2.pdb ( medoid)	27.108	3.8365	14.607	104
cluster_3.pdb ( medoid)	20.9556	6.10815	24.9213	128
cluster_4.pdb ( medoid)	19.6231	6.21717	15.3361	122
cluster_5.pdb ( medoid)	18.6001	6.82792	14.6946	127
cluster_6.pdb ( medoid)	17.1033	7.71779	16.3142	132
cluster_7.pdb ( medoid)	11.6781	6.76479	19.7002	79
cluster_8.pdb ( medoid)	9.93661	6.74274	15.2324	67
cluster_9.pdb ( medoid)	8.30568	7.46477	16.315	62
cluster_10.pdb ( medoid)	7.38546	10.5613	21.54	78