CABS-dock: 217a3a731d501fe

Project name: 217a3a731d501fe

Status: done

submitted: 2026-04-20 01:47:26, status changed: 2026-04-20 08:38:21

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	EREIDDIVLDNNEEDLDTSD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.931	12.5778	38.0889	301
cluster_2.pdb ( medoid)	17.3631	7.19919	39.5197	125
cluster_3.pdb ( medoid)	13.5636	4.93971	20.8553	67
cluster_4.pdb ( medoid)	12.4764	10.2594	33.1325	128
cluster_5.pdb ( medoid)	12.0715	5.79878	18.0722	70
cluster_6.pdb ( medoid)	11.0841	11.0068	30.3424	122
cluster_7.pdb ( medoid)	6.75625	6.95652	17.758	47
cluster_8.pdb ( medoid)	5.49676	9.64204	29.3078	53
cluster_9.pdb ( medoid)	5.00169	11.1962	29.212	56
cluster_10.pdb ( medoid)	3.75101	8.26444	28.4247	31