CABS-dock: 7T5M_VTLTYD

Project name: 7T5M_VTLTYD_E2

Status: done

submitted: 2026-05-30 16:13:47, status changed: 2026-05-31 14:53:46

Project settings

Protein sequence(s)	GSSHSSMMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRRFDSDAASQRMEEPRAPWIEQEGPPEYWDGETRRKVKAHSQTHRVDLGTLLRGYYNQSEAGSHTVQRMYGCDVVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHHHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKKETLQRTTDAPKKTHMMTHHAVSDHEATLRCWALSFYPPAEITLTWQRDGEDDQTQDTELVETRPAGDGTFQKWAAVVVPSSSGQEQRYTCHVQHEGLPKPLTLRWEP input pdb
Peptide sequence	VTLTYDSEWQRDQFLSQVKI
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCCHHHHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.7491	2.40762	12.4498	127
cluster_2.pdb ( medoid)	37.8565	3.80383	16.7832	144
cluster_3.pdb ( medoid)	34.0718	4.49052	12.6497	153
cluster_4.pdb ( medoid)	23.9471	4.67698	15.6271	112
cluster_5.pdb ( medoid)	22.5286	6.65821	24.2965	150
cluster_6.pdb ( medoid)	19.1833	3.12771	11.9945	60
cluster_7.pdb ( medoid)	10.1821	7.26764	16.2046	74
cluster_8.pdb ( medoid)	7.11392	9.55873	21.1122	68
cluster_9.pdb ( medoid)	4.46983	12.7522	24.298	57
cluster_10.pdb ( medoid)	3.78609	14.5269	33.8436	55