CABS-dock: SVHRSP-Tacr3

Project name: SVHRSP-Tacr3

Status: done

submitted: 2026-06-03 14:36:44, status changed: 2026-06-03 20:06:00

Project settings

Protein sequence(s)	NQFVQPSWRIALWSLAYGVVVAVAVLGNLIVIWIILAHKMRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPGRTLCFVQWPEGPKQHFTYHIIVIILVYCFPLLIMGITYTIVGITLWQLKAKRKVVKMMIIVVMTFAICWLPYHIYFILTAIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRFRAGFK input pdb
Peptide sequence	KVLNGPEEEAAAPAE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.6065	2.76018	19.0553	90
cluster_2.pdb ( medoid)	31.8363	3.98915	26.5824	127
cluster_3.pdb ( medoid)	19.6032	6.17246	27.6634	121
cluster_4.pdb ( medoid)	17.2863	6.59483	41.613	114
cluster_5.pdb ( medoid)	17.2761	6.5987	25.97	114
cluster_6.pdb ( medoid)	13.8155	10.4231	41.6975	144
cluster_7.pdb ( medoid)	12.8	6.48435	13.7494	83
cluster_8.pdb ( medoid)	6.03846	9.93631	21.2631	60
cluster_9.pdb ( medoid)	5.68138	17.4253	43.2342	99
cluster_10.pdb ( medoid)	2.95319	16.2536	33.8079	48