CABS-dock: LVFLGGEQRAYPDHSLSTLPEIMKRLQHGL

Project name: LVFLGGEQRAYPDHSLSTLPEIMKRLQHGL_FAPdock

Status: done

submitted: 2025-10-07 22:05:01, status changed: 2025-10-08 03:20:07

Project settings

Protein sequence(s)	IQLPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLSTNHLYTHMTHFLKQCFS input pdb
Peptide sequence	LVFLGGEQRAYPDHSLSTLPEIMKRLQHGL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.9549	3.49022	15.1091	122
cluster_2.pdb ( medoid)	32.2785	2.01372	13.9059	65
cluster_3.pdb ( medoid)	22.4482	4.81109	38.3495	108
cluster_4.pdb ( medoid)	15.0909	7.62047	26.9808	115
cluster_5.pdb ( medoid)	11.2396	6.49488	21.416	73
cluster_6.pdb ( medoid)	10.9024	8.98881	40.2585	98
cluster_7.pdb ( medoid)	9.69388	12.8947	40.8919	125
cluster_8.pdb ( medoid)	8.09431	17.7903	45.0754	144
cluster_9.pdb ( medoid)	6.75423	6.51444	24.7688	44
cluster_10.pdb ( medoid)	6.08262	17.4267	47.3093	106