CABS-dock: Microcin

Project name: Microcin

Status: done

submitted: 2026-01-10 11:16:44, status changed: 2026-01-10 16:07:18

Project settings

Protein sequence(s)	MSRIILFAAILAIIAVSANGASNLPALDMASIPDEYKDLVPPEVTTFYNELTEDDKKILKEVAEKHSEYATDEDALNALKEKSEKLYTKANELRNLVKDRISKLNPEAKTFVDTIIEKLKALRPKEDEKPNLTELRKEANEIVEKFKALSEEAKESLKTNFPKITGVIQNEKFQKLAQSLLKPEGAAAPA input pdb
Peptide sequence	GGAGHVPEYFVGIGTPISFYG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	44.9624	2.57993	19.2886	116
cluster_2.pdb ( medoid)	20.994	5.19195	35.2676	109
cluster_3.pdb ( medoid)	17.4515	6.24588	36.4556	109
cluster_4.pdb ( medoid)	17.3455	11.0692	30.5356	192
cluster_5.pdb ( medoid)	10.7302	10.065	38.1837	108
cluster_6.pdb ( medoid)	7.58405	13.713	25.0344	104
cluster_7.pdb ( medoid)	6.06416	12.3677	28.7981	75
cluster_8.pdb ( medoid)	5.5214	14.4891	30.1878	80
cluster_9.pdb ( medoid)	4.70164	15.1011	31.7497	71
cluster_10.pdb ( medoid)	3.16054	11.3904	23.2139	36