CABS-dock: EPFWPGLFA

Project name: EPFWPGLFA_ıl12

Status: done

submitted: 2025-03-09 19:12:59, status changed: 2025-03-09 20:12:00

Project settings

Protein sequence(s)	SLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITWTLDQSSEVLGSGKTLTIQ input pdb
Peptide sequence	EPFWPGLFA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.4182	1.94589	14.7671	102
cluster_2.pdb ( medoid)	34.2238	4.70433	23.3946	161
cluster_3.pdb ( medoid)	20.2063	5.69129	17.2152	115
cluster_4.pdb ( medoid)	16.6649	6.36066	18.1791	106
cluster_5.pdb ( medoid)	16.5328	5.92759	20.8758	98
cluster_6.pdb ( medoid)	13.5727	8.84125	26.3302	120
cluster_7.pdb ( medoid)	11.6255	7.82765	26.3884	91
cluster_8.pdb ( medoid)	11.1082	8.82235	22.9613	98
cluster_9.pdb ( medoid)	4.50831	11.9779	23.0671	54
cluster_10.pdb ( medoid)	3.92996	13.9951	27.2115	55