CABS-dock: 243eb9f989a9bee

Project name: 243eb9f989a9bee

Status: done

submitted: 2026-01-12 17:37:49, status changed: 2026-01-13 06:41:32

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	ATLKNVNLGENEVDGIHVKAKNAQE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.1717	1.95421	4.3186	100
cluster_2.pdb ( medoid)	41.9275	1.8365	3.22759	77
cluster_3.pdb ( medoid)	26.4538	2.91073	8.81481	77
cluster_4.pdb ( medoid)	15.9363	1.44324	2.65782	23
cluster_5.pdb ( medoid)	13.2588	8.29635	22.3331	110
cluster_6.pdb ( medoid)	10.5093	12.2749	31.2018	129
cluster_7.pdb ( medoid)	9.0956	10.7744	37.29	98
cluster_8.pdb ( medoid)	3.94531	12.9267	27.2741	51
cluster_9.pdb ( medoid)	3.46237	6.64285	10.5233	23
cluster_10.pdb ( medoid)	1.42764	8.40546	13.4657	12