CABS-dock: 25abfc8c60a8033

Project name: 25abfc8c60a8033

Status: done

submitted: 2026-07-16 14:03:01, status changed: 2026-07-16 22:38:54

Project settings

Protein sequence(s)	RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVIHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ input pdb
Peptide sequence	TLRNDNSSRFGK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	106.515	0.985775	4.96367	105
cluster_2.pdb ( medoid)	38.0368	5.31064	32.089	202
cluster_3.pdb ( medoid)	31.4747	3.49488	8.58989	110
cluster_4.pdb ( medoid)	19.7678	5.46343	17.5397	108
cluster_5.pdb ( medoid)	17.4375	7.34049	40.8746	128
cluster_6.pdb ( medoid)	9.08534	5.28324	16.0178	48
cluster_7.pdb ( medoid)	8.83629	13.4672	37.2711	119
cluster_8.pdb ( medoid)	6.49169	10.4749	29.9384	68
cluster_9.pdb ( medoid)	5.71386	13.126	33.3123	75
cluster_10.pdb ( medoid)	1.95836	18.8933	39.6469	37