CABS-dock: 263de0f4ce8b9e5

Project name: 263de0f4ce8b9e5

Status: done

submitted: 2026-07-08 09:34:33, status changed: 2026-07-08 13:44:56

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	ADTHERGWGYGNLRK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	44.2476	2.30521	23.4546	102
cluster_2.pdb ( medoid)	17.4419	8.82931	35.1253	154
cluster_3.pdb ( medoid)	12.2419	14.7036	28.9908	180
cluster_4.pdb ( medoid)	12.0949	5.78759	18.0692	70
cluster_5.pdb ( medoid)	9.86482	11.6576	34.4784	115
cluster_6.pdb ( medoid)	9.70213	9.79166	29.2553	95
cluster_7.pdb ( medoid)	8.59029	16.9959	37.8303	146
cluster_8.pdb ( medoid)	7.40501	9.45306	31.0186	70
cluster_9.pdb ( medoid)	7.10166	5.06924	12.205	36
cluster_10.pdb ( medoid)	6.77649	4.72221	8.24364	32