CABS-dock: 26d090840178294

Project name: 26d090840178294

Status: done

submitted: 2025-12-31 16:39:44, status changed: 2025-12-31 19:06:02

Project settings

Protein sequence(s)	RLRGAVTRCEDGQLFITMEVQNNSVVIKCDGLYIIYLKGSFFQEVKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFKDKVYLTVNAPDTLCEHLQINDGELIVVQLTPGYC input pdb
Peptide sequence	TQDTVCRCRPGTQPR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.5467	4.61035	18.6522	127
cluster_2.pdb ( medoid)	25.0353	4.15414	14.5369	104
cluster_3.pdb ( medoid)	15.0908	8.74704	20.9469	132
cluster_4.pdb ( medoid)	12.8041	16.4791	33.0779	211
cluster_5.pdb ( medoid)	11.9824	6.09227	25.27	73
cluster_6.pdb ( medoid)	9.77296	6.03706	21.0916	59
cluster_7.pdb ( medoid)	9.54888	9.00629	27.3174	86
cluster_8.pdb ( medoid)	7.76407	10.6903	25.8408	83
cluster_9.pdb ( medoid)	7.52506	9.16936	22.3911	69
cluster_10.pdb ( medoid)	6.48334	8.63753	27.4381	56