CABS-dock: 26e1f9db1ae8293

Project name: 26e1f9db1ae8293

Status: done

submitted: 2026-07-23 10:36:47, status changed: 2026-07-23 12:30:12

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	RVIFVQCGFSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.9893	4.50173	23.3011	126
cluster_2.pdb ( medoid)	23.7199	5.94439	21.9722	141
cluster_3.pdb ( medoid)	21.1784	6.65772	22.4181	141
cluster_4.pdb ( medoid)	19.313	6.0063	24.3021	116
cluster_5.pdb ( medoid)	8.21731	16.0637	33.9963	132
cluster_6.pdb ( medoid)	7.76391	8.75847	24.0794	68
cluster_7.pdb ( medoid)	7.63953	7.59209	28.3484	58
cluster_8.pdb ( medoid)	6.51104	13.0548	24.5277	85
cluster_9.pdb ( medoid)	5.38917	13.5457	34.8475	73
cluster_10.pdb ( medoid)	4.59901	13.0463	29.4684	60