CABS-dock: 278062481e465a0

Project name: 278062481e465a0

Status: done

submitted: 2025-02-04 16:51:22, status changed: 2025-02-04 22:22:23

Project settings

Protein sequence(s)	MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPF input pdb
Peptide sequence	QEGQKL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	68.2427	0.718025	6.60667	49
cluster_2.pdb ( medoid)	39.9714	7.88063	29.3508	315
cluster_3.pdb ( medoid)	34.4822	5.65508	19.2925	195
cluster_4.pdb ( medoid)	16.8531	5.63695	13.1659	95
cluster_5.pdb ( medoid)	16.7659	3.16118	19.4341	53
cluster_6.pdb ( medoid)	15.0414	6.7813	27.2677	102
cluster_7.pdb ( medoid)	13.1075	4.8064	11.3435	63
cluster_8.pdb ( medoid)	7.61216	7.35665	15.7353	56
cluster_9.pdb ( medoid)	4.14283	10.8622	23.349	45
cluster_10.pdb ( medoid)	3.49322	7.72927	21.5927	27