CABS-dock: ALS_rank2

Project name: ALS_rank2_KPSTLQSGRLGR

Status: done

submitted: 2026-06-27 20:44:07, status changed: 2026-06-28 01:12:02

Project settings

Protein sequence(s)	IIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPGPVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTGGGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTDDLSLHMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESRKGKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAAQFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVSDL input pdb
Peptide sequence	KPSTLQSGRLGR
Simulation mc cycles	20
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.6155	5.31696	16.0854	200
cluster_2.pdb ( medoid)	35.7292	2.99475	25.276	107
cluster_3.pdb ( medoid)	19.6765	10.3169	38.9237	203
cluster_4.pdb ( medoid)	15.6048	7.17728	22.206	112
cluster_5.pdb ( medoid)	13.441	7.5143	24.7732	101
cluster_6.pdb ( medoid)	12.0328	7.31335	22.3435	88
cluster_7.pdb ( medoid)	5.44034	9.55822	23.0302	52
cluster_8.pdb ( medoid)	5.01548	12.3617	26.4265	62
cluster_9.pdb ( medoid)	3.6527	9.03442	29.4336	33
cluster_10.pdb ( medoid)	2.52977	16.6023	35.5808	42