CABS-dock: 27d6ffb892b319e

Project name: 27d6ffb892b319e

Status: done

submitted: 2026-07-22 09:13:31, status changed: 2026-07-22 12:18:41

Project settings

Protein sequence(s)	EGVLYVGSKTKEGVVHDVTTVAQKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLEGVLYVGSKTKEGVVHDVTTVAQKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLEGVLYVGSKTKEGVVHDVTTVAQKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL input pdb
Peptide sequence	IGASWPDHATT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.6988	7.81177	32.1679	232
cluster_2.pdb ( medoid)	26.7329	6.20958	31.161	166
cluster_3.pdb ( medoid)	23.5403	5.09764	21.8101	120
cluster_4.pdb ( medoid)	23.2325	2.88389	9.22485	67
cluster_5.pdb ( medoid)	10.1908	7.75213	15.6002	79
cluster_6.pdb ( medoid)	9.98985	5.30538	24.5332	53
cluster_7.pdb ( medoid)	9.66672	6.41376	14.9394	62
cluster_8.pdb ( medoid)	5.12916	21.251	45.7514	109
cluster_9.pdb ( medoid)	4.02982	13.6483	37.5571	55
cluster_10.pdb ( medoid)	3.09654	18.4076	32.2386	57