CABS-dock: Chn-CN-Bos

Project name: Chn-CN-Bos

Status: done

submitted: 2026-03-12 09:21:31, status changed: 2026-03-12 21:07:06

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	ARHPHPHLSFMAIPPKKNQDKTEI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCEECCCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.6004	3.24401	14.7369	109
cluster_2.pdb ( medoid)	32.031	4.33954	22.8623	139
cluster_3.pdb ( medoid)	21.2598	9.73671	45.297	207
cluster_4.pdb ( medoid)	14.3796	9.5274	22.1683	137
cluster_5.pdb ( medoid)	13.6619	7.68563	19.253	105
cluster_6.pdb ( medoid)	5.24468	14.1095	39.1844	74
cluster_7.pdb ( medoid)	4.79182	18.156	38.5332	87
cluster_8.pdb ( medoid)	3.82287	17.0029	40.6198	65
cluster_9.pdb ( medoid)	2.06597	18.8773	35.9029	39
cluster_10.pdb ( medoid)	1.76945	21.4756	59.7531	38