CABS-dock: 2ns4

Project name: 2ns4

Status: done

submitted: 2025-12-12 16:13:26, status changed: 2025-12-12 19:31:09

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	RVRTRKGRRIRIPP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.5819	8.4644	40.3829	225
cluster_2.pdb ( medoid)	24.9294	5.41529	13.4816	135
cluster_3.pdb ( medoid)	24.7675	4.96619	18.2561	123
cluster_4.pdb ( medoid)	12.4411	7.15373	15.8655	89
cluster_5.pdb ( medoid)	11.7509	6.38251	16.678	75
cluster_6.pdb ( medoid)	10.4447	7.46787	27.9135	78
cluster_7.pdb ( medoid)	9.96881	6.82128	25.0285	68
cluster_8.pdb ( medoid)	5.21524	16.1067	42.4296	84
cluster_9.pdb ( medoid)	5.1408	13.033	40.3866	67
cluster_10.pdb ( medoid)	4.95436	11.3032	25.3188	56