CABS-dock: 2EXL-P08670-4

Project name: 2EXL-P08670-4

Status: done

submitted: 2025-02-05 01:15:24, status changed: 2025-02-05 13:24:55

Project settings

Protein sequence(s)	KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIASTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTKTVWDWELMNSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTISTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTKTVWDWELMN input pdb
Peptide sequence	SLPLVDTHSKRTLL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.1891	3.25408	31.4011	108
cluster_2.pdb ( medoid)	28.8028	3.08998	6.60125	89
cluster_3.pdb ( medoid)	27.369	10.2671	42.7422	281
cluster_4.pdb ( medoid)	25.6601	1.83164	17.8896	47
cluster_5.pdb ( medoid)	14.8312	4.51752	32.9548	67
cluster_6.pdb ( medoid)	14.3523	8.15199	27.3409	117
cluster_7.pdb ( medoid)	10.635	10.7193	51.9226	114
cluster_8.pdb ( medoid)	8.98579	10.3497	24.9256	93
cluster_9.pdb ( medoid)	5.97652	9.20268	31.7222	55
cluster_10.pdb ( medoid)	2.08453	13.912	31.2344	29