CABS-dock: 7T5M_THYEND

Project name: 7T5M_THYEND_E2

Status: done

submitted: 2026-05-30 16:06:43, status changed: 2026-05-31 15:06:43

Project settings

Protein sequence(s)	GSSHSSMMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRRFDSDAASQRMEEPRAPWIEQEGPPEYWDGETRRKVKAHSQTHRVDLGTLLRGYYNQSEAGSHTVQRMYGCDVVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHHHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKKETLQRTTDAPKKTHMMTHHAVSDHEATLRCWALSFYPPAEITLTWQRDGEDDQTQDTELVETRPAGDGTFQKWAAVVVPSSSGQEQRYTCHVQHEGLPKPLTLRWEP input pdb
Peptide sequence	THYENDSTDLRDHIDYWKHMRL
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCCCCHHHHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.7583	2.00952	12.2007	102
cluster_2.pdb ( medoid)	46.1454	1.01852	9.68916	47
cluster_3.pdb ( medoid)	32.3776	3.55184	13.4734	115
cluster_4.pdb ( medoid)	30.3278	1.87946	7.75375	57
cluster_5.pdb ( medoid)	18.9852	12.062	30.025	229
cluster_6.pdb ( medoid)	17.4672	5.20976	14.176	91
cluster_7.pdb ( medoid)	16.1692	6.18459	18.7187	100
cluster_8.pdb ( medoid)	9.83589	10.6752	21.6217	105
cluster_9.pdb ( medoid)	8.99926	11.3343	25.2154	102
cluster_10.pdb ( medoid)	7.28162	7.14126	14.4373	52