CABS-dock: RO33_USP7

Project name: RO33_USP7_MATH

Status: done

submitted: 2026-01-12 17:51:43, status changed: 2026-01-12 20:21:30

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW input pdb
Peptide sequence	PSGTASTKGAIRSPGAANPSDDSSDSDAKS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.1974	4.38064	26.8537	106
cluster_2.pdb ( medoid)	16.3769	10.6247	23.9162	174
cluster_3.pdb ( medoid)	16.0637	7.90601	26.4604	127
cluster_4.pdb ( medoid)	12.0229	11.3949	28.579	137
cluster_5.pdb ( medoid)	9.79775	13.2683	30.422	130
cluster_6.pdb ( medoid)	8.91876	10.3153	29.9374	92
cluster_7.pdb ( medoid)	5.87108	11.4119	25.0709	67
cluster_8.pdb ( medoid)	4.77027	11.7394	25.8534	56
cluster_9.pdb ( medoid)	4.38099	11.8695	22.4129	52
cluster_10.pdb ( medoid)	3.3384	17.6731	33.7474	59