CABS-dock: 2bc091b9e64f6f4

Project name: 2bc091b9e64f6f4

Status: done

submitted: 2025-12-26 01:01:46, status changed: 2025-12-26 05:10:21

Project settings

Protein sequence(s)	GPTQSFFMRESKTLGAVQIMNGLFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSR input pdb
Peptide sequence	GYTFTSYNMHWVK
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	45.1691	1.50545	15.0257	68
cluster_2.pdb ( medoid)	40.6063	1.30522	2.27738	53
cluster_3.pdb ( medoid)	32.9344	8.01594	24.7543	264
cluster_4.pdb ( medoid)	29.3426	2.45377	7.07632	72
cluster_5.pdb ( medoid)	22.2154	5.62673	15.8603	125
cluster_6.pdb ( medoid)	21.483	4.00317	10.7306	86
cluster_7.pdb ( medoid)	12.6839	11.7472	25.7059	149
cluster_8.pdb ( medoid)	11.195	5.89551	16.3012	66
cluster_9.pdb ( medoid)	10.3723	8.19491	20.8516	85
cluster_10.pdb ( medoid)	3.33107	9.60652	22.0682	32