CABS-dock: 2bc668bbc258a00

Project name: 2bc668bbc258a00

Status: done

submitted: 2026-06-17 04:54:13, status changed: 2026-06-17 17:23:00

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	NFLPPLQPAVMVPFLQPKV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.2738	4.35779	14.0903	145
cluster_2.pdb ( medoid)	19.0559	8.18642	21.4315	156
cluster_3.pdb ( medoid)	17.1445	6.18273	16.0574	106
cluster_4.pdb ( medoid)	11.327	12.2715	34.7198	139
cluster_5.pdb ( medoid)	7.66651	8.47843	20.9883	65
cluster_6.pdb ( medoid)	7.19526	10.4235	30.0187	75
cluster_7.pdb ( medoid)	6.30888	17.4358	52.5314	110
cluster_8.pdb ( medoid)	5.7575	9.72645	31.3526	56
cluster_9.pdb ( medoid)	5.61139	13.1875	31.6428	74
cluster_10.pdb ( medoid)	4.39536	11.3756	22.8753	50