CABS-dock: 5WTA-DVFLG

Project name: 5WTA-DVFLG

Status: done

submitted: 2025-10-08 12:49:18, status changed: 2025-10-08 17:52:17

Project settings

Protein sequence(s)	SNNVNDLITVTKQTIKVGDGKDNVAAAHDGKDIEYDTEFTIDNKVKKGDTMTINYDKNVIPSDLTDKNDPIDITDPSGEVIAKGTFDKATKQITYTFTDYVDKYEDIKARLTLYSYIDKQAVPNETSLNLTFATAGKETSQNVSVDYQDPMVHGDSNIQSIFTKLDENKQTIEQQIYVNPLKKTATNTKVDIAGSQVDDYGNIKLGNGSTIIDQNTEMKVYKVNPNQQLPQSNRIYDFSQYEDVTSQFDNKKSFSNNVATLDFGDINSAYIIKVVSKYTPTSDGELDIAQGTSMRTTDKYGYYNYAGYSNFIVTS input pdb
Peptide sequence	DVFLG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	131.3	0.769229	17.806	101
cluster_2.pdb ( medoid)	39.8536	7.47737	39.4733	298
cluster_3.pdb ( medoid)	33.951	3.06324	20.4773	104
cluster_4.pdb ( medoid)	15.8935	4.15264	29.6873	66
cluster_5.pdb ( medoid)	14.1275	8.77723	33.2873	124
cluster_6.pdb ( medoid)	14.0039	6.92664	25.0191	97
cluster_7.pdb ( medoid)	9.94001	4.12474	26.1729	41
cluster_8.pdb ( medoid)	5.94414	10.2622	31.4796	61
cluster_9.pdb ( medoid)	4.14138	17.8684	47.593	74
cluster_10.pdb ( medoid)	2.67805	12.6958	38.9832	34