CABS-dock: 2cd4bacfba81c5e

Project name: 2cd4bacfba81c5e

Status: done

submitted: 2025-12-23 15:34:06, status changed: 2025-12-24 04:32:15

Project settings

Protein sequence(s)	MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI input pdb
Peptide sequence	RVIFVQCGSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	70.684	1.44304	24.234	102
cluster_2.pdb ( medoid)	16.5717	7.8447	22.7953	130
cluster_3.pdb ( medoid)	14.7258	7.06241	25.4364	104
cluster_4.pdb ( medoid)	12.3488	5.50661	12.5061	68
cluster_5.pdb ( medoid)	11.1819	8.76415	35.2731	98
cluster_6.pdb ( medoid)	10.621	6.0258	26.8214	64
cluster_7.pdb ( medoid)	9.7741	10.6404	29.5481	104
cluster_8.pdb ( medoid)	8.78218	5.46561	20.1999	48
cluster_9.pdb ( medoid)	6.72539	4.90678	16.8369	33
cluster_10.pdb ( medoid)	3.68618	13.2929	32.3498	49