CABS-dock: TASK1_PEP_1

Project name: TASK1_PEP_1_1 helix

Status: done

submitted: 2026-07-22 19:42:41, status changed: 2026-07-23 09:16:26

Project settings

Protein sequence(s)

MKRQNVRTLALIVCTFTYLLVGAAVFDALESEPELIERQRLELRQQELRARYNLSQGGYEELERVVLRLKPHKAGVQWRFAGSFYFAITVITTIGYGHAAPSTDGGKVFCMFYALLGIPLTLVMFQSLGERINTLVRYLLHRAKDVSMANMVLIGFFSCISTLCIGAAAFSHYEHWTFFQAYYYCFITLTTIGFGDYVALQKDQALQTQPQYVAFSFVYILTGLTVIGAFLNLVVLRFMTMNAEMKRQNVRTLALIVCTFTYLLVGAAVFDALESEPELIERQRLELRQQELRARYNLSQGGYEELERVVLRLKPHKAGVQWRFAGSFYFAITVITTIGYGHAAPSTDGGKVFCMFYALLGIPLTLVMFQSLGERINTLVRYLLHRAKDVSMANMVLIGFFSCISTLCIGAAAFSHYEHWTFFQAYYYCFITLTTIGFGDYVALQKDQALQTQPQYVAFSFVYILTGLTVIGAFLNLVVLRFMTMNAE input pdb

Peptide sequence

CPHLTSDYNNFIPCGQAGQ

Simulation mc cycles

Peptide secondary structure

CCHHHCCCCHHHCCCCCCC

Contact information

70:A 7:PEP 5.0 1.0

98:A 8:PEP 5.0 1.0

1070:B 10:PEP 5.0 1.0

1098:B 11:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.3305	1.68884	6.39943	85
cluster_2.pdb ( medoid)	35.5405	4.38936	12.5768	156
cluster_3.pdb ( medoid)	28.641	5.30709	11.4388	152
cluster_4.pdb ( medoid)	27.6259	4.34374	7.48056	120
cluster_5.pdb ( medoid)	25.4513	5.65787	13.0289	144
cluster_6.pdb ( medoid)	20.3508	3.63622	7.41376	74
cluster_7.pdb ( medoid)	15.9008	5.21987	8.94765	83
cluster_8.pdb ( medoid)	14.721	5.29856	10.3961	78
cluster_9.pdb ( medoid)	11.9944	4.1686	7.0028	50
cluster_10.pdb ( medoid)	11.457	5.06239	10.1756	58