CABS-dock: PEPTIDE31

Project name: PEPTIDE31

Status: done

submitted: 2025-07-02 11:51:48, status changed: 2025-07-02 15:56:28

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FYNYK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.2269	5.02962	20.6532	147
cluster_2.pdb ( medoid)	29.1084	6.42426	21.7752	187
cluster_3.pdb ( medoid)	22.5709	8.28499	37.4823	187
cluster_4.pdb ( medoid)	18.3192	6.27756	30.7716	115
cluster_5.pdb ( medoid)	11.8569	7.08448	24.5635	84
cluster_6.pdb ( medoid)	8.86204	7.33465	19.9264	65
cluster_7.pdb ( medoid)	8.22741	8.87278	32.5581	73
cluster_8.pdb ( medoid)	5.65312	14.1515	33.6534	80
cluster_9.pdb ( medoid)	3.38392	10.9341	40.0588	37
cluster_10.pdb ( medoid)	2.68306	9.31771	23.4054	25