CABS-dock: 2e124c67847f6b8

Project name: 2e124c67847f6b8

Status: done

submitted: 2026-03-09 08:47:04, status changed: 2026-03-09 14:34:04

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	VQLFGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.7797	7.50813	31.405	141
cluster_2.pdb ( medoid)	14.4432	12.6011	53.3512	182
cluster_3.pdb ( medoid)	9.45493	8.99002	38.317	85
cluster_4.pdb ( medoid)	9.27398	13.6942	52.0354	127
cluster_5.pdb ( medoid)	7.33698	6.6785	33.8934	49
cluster_6.pdb ( medoid)	7.01588	11.5452	41.7317	81
cluster_7.pdb ( medoid)	6.9602	13.7927	41.9288	96
cluster_8.pdb ( medoid)	6.32162	16.2933	42.9295	103
cluster_9.pdb ( medoid)	4.37948	18.267	40.9226	80
cluster_10.pdb ( medoid)	2.59657	21.567	55.5041	56