CABS-dock: 2ecc22899b184c7

Project name: 2ecc22899b184c7

Status: done

submitted: 2026-06-17 04:52:52, status changed: 2026-06-17 17:24:05

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	LPPLQPAVMVPFLQPKVM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEECCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.1178	7.52456	16.7922	189
cluster_2.pdb ( medoid)	22.9392	4.31576	12.6254	99
cluster_3.pdb ( medoid)	13.5151	7.17717	25.3927	97
cluster_4.pdb ( medoid)	12.277	4.88719	21.5054	60
cluster_5.pdb ( medoid)	11.5968	10.8651	43.2846	126
cluster_6.pdb ( medoid)	11.2552	7.6409	35.1675	86
cluster_7.pdb ( medoid)	7.89758	8.86347	36.8484	70
cluster_8.pdb ( medoid)	7.46621	12.724	31.7942	95
cluster_9.pdb ( medoid)	6.71009	14.4558	40.9869	97
cluster_10.pdb ( medoid)	5.72194	14.156	50.2519	81