CABS-dock: LexA-Cs7

Project name: LexA-Cs7

Status: done

submitted: 2026-01-10 14:51:35, status changed: 2026-01-10 18:06:50

Project settings

Protein sequence(s)	EEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVVIRNGDWL input pdb
Peptide sequence	IEKKGAHQNVHQKLIVA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCHHCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.741	8.78989	31.3523	279
cluster_2.pdb ( medoid)	22.8509	5.07639	32.2709	116
cluster_3.pdb ( medoid)	17.2956	6.64908	22.1033	115
cluster_4.pdb ( medoid)	15.1302	6.41101	24.7665	97
cluster_5.pdb ( medoid)	11.6778	9.50521	36.7432	111
cluster_6.pdb ( medoid)	9.42124	11.5696	29.5095	109
cluster_7.pdb ( medoid)	8.50166	6.3517	12.4687	54
cluster_8.pdb ( medoid)	7.30068	6.71171	23.4763	49
cluster_9.pdb ( medoid)	5.93242	8.93395	28.4635	53
cluster_10.pdb ( medoid)	2.04259	8.32278	14.2833	17