CABS-dock: 4OZ1

Project name: 4OZ1

Status: done

submitted: 2026-03-19 19:51:09, status changed: 2026-03-20 01:30:16

Project settings

Protein sequence(s)	VQPLATQCFQLSSNMFNPQTEEEVGWDTEIKDDVIEEECNKHGGVIHIYVDKNSSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSPLATQCFQLSSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIIYVDKNSAQQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR input pdb
Peptide sequence	KRKSRWDETP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.2394	5.67629	31.26	183
cluster_2.pdb ( medoid)	24.2625	4.78103	17.0332	116
cluster_3.pdb ( medoid)	23.7497	5.47374	23.8325	130
cluster_4.pdb ( medoid)	23.3069	5.14868	34.7238	120
cluster_5.pdb ( medoid)	22.1391	7.22703	32.3658	160
cluster_6.pdb ( medoid)	20.3264	5.11651	20.6263	104
cluster_7.pdb ( medoid)	8.69017	10.0113	29.2728	87
cluster_8.pdb ( medoid)	6.99944	6.42909	23.5848	45
cluster_9.pdb ( medoid)	3.36021	9.52322	26.281	32
cluster_10.pdb ( medoid)	1.98207	11.604	27.4282	23