CABS-dock: 7RP8 200

Project name: 7RP8 200

Status: done

submitted: 2025-11-13 04:14:10, status changed: 2025-11-14 05:36:09

Project settings

Protein sequence(s)	HISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFDMLNALIGLENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLENLGII input pdb
Peptide sequence	KDSMEEY
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.0849	2.05331	10.2246	109
cluster_2.pdb ( medoid)	39.118	0.894728	3.96182	35
cluster_3.pdb ( medoid)	39.0281	1.35799	9.74037	53
cluster_4.pdb ( medoid)	29.0936	3.88401	31.8062	113
cluster_5.pdb ( medoid)	27.3563	8.55379	44.4396	234
cluster_6.pdb ( medoid)	18.654	2.19792	8.90096	41
cluster_7.pdb ( medoid)	17.4326	10.3828	44.1987	181
cluster_8.pdb ( medoid)	15.5719	6.93555	28.0463	108
cluster_9.pdb ( medoid)	7.92668	9.33556	33.4395	74
cluster_10.pdb ( medoid)	4.37009	11.8991	33.2772	52