CABS-dock: TeqPKAC3-VAP26

Project name: TeqPKAC3-VAP26

Status: done

submitted: 2026-04-12 04:23:01, status changed: 2026-04-12 11:40:56

Project settings

Protein sequence(s)	LQDLEIRETIGTGTFGRVRLCRHRASGQYVVLKILKKQEILRMKQVDHILAESSILQELSHPFIVTMYKGFMDDDRLYLLLEYVVGGELFSHLRKAGKFPNDVAKFYSAEVVLAFEYIHECGIVYRDLKPENVLLDKQGNIKITDFGFAKRVRDRTYTLCGTPEYLAPEIIQSKGHDRAVDWWTLGILLYEMLVGYPPFFDESPFRTYEKILEGKLQFPKWVEMRAKDLIKSFLTIEPTKRLGSVKRGVQDVKRHKFYSGVNWNVLLQRGVAAPIHVRLNNDGDTRYFDRYPESPRHPLQPLTEAQQELFSGF input pdb
Peptide sequence	VAPYFEKSEDETALILKLLTYNVLFS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHHHHHHHHHHHHHHCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.1671	2.67246	12.3729	102
cluster_2.pdb ( medoid)	29.5774	3.51619	26.7288	104
cluster_3.pdb ( medoid)	28.2367	4.67476	24.4004	132
cluster_4.pdb ( medoid)	21.1664	8.4568	18.6953	179
cluster_5.pdb ( medoid)	20.4302	4.89471	9.4301	100
cluster_6.pdb ( medoid)	16.4686	6.61865	16.1623	109
cluster_7.pdb ( medoid)	11.8315	7.26875	15.7297	86
cluster_8.pdb ( medoid)	9.30467	12.3594	23.3016	115
cluster_9.pdb ( medoid)	4.80036	5.20795	11.4776	25
cluster_10.pdb ( medoid)	4.53622	10.5815	26.7262	48