CABS-dock: LACTOTRANSFERIN

Project name: LACTOTRANSFERIN

Status: done

submitted: 2026-01-12 09:58:29, status changed: 2026-01-12 18:11:36

Project settings

Protein sequence(s)	MSRIILFAAILAIIAVSANGASNLPALDMASIPDEYKDLVPPEVTTFYNELTEDDKKILKEVAEKHSEYATDEDALNALKEKSEKLYTKANELRNLVKDRISKLNPEAKTFVDTIIEKLKALRPKEDEKPNLTELRKEANEIVEKFKALSEEAKESLKTNFPKITGVIQNEKFQKLAQSLLKPEGAAAPA input pdb
Peptide sequence	RRWQWRMKKLG
Simulation mc cycles	100
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	121.348	0.832316	19.7432	101
cluster_2.pdb ( medoid)	37.2075	2.71451	22.627	101
cluster_3.pdb ( medoid)	29.7607	6.92189	30.9046	206
cluster_4.pdb ( medoid)	18.2417	6.52351	30.8656	119
cluster_5.pdb ( medoid)	12.643	6.80217	31.6759	86
cluster_6.pdb ( medoid)	11.6628	8.66002	24.4999	101
cluster_7.pdb ( medoid)	9.5144	11.4563	33.7557	109
cluster_8.pdb ( medoid)	8.89975	7.30357	23.0539	65
cluster_9.pdb ( medoid)	6.75906	11.2442	23.5749	76
cluster_10.pdb ( medoid)	2.97928	12.0835	29.6724	36