CABS-dock: 33256aa07595eec

Project name: 33256aa07595eec

Status: done

submitted: 2026-04-19 14:30:37, status changed: 2026-04-19 21:24:08

Project settings

Protein sequence(s)	CHQVRGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQLMNPGLDINECLRGARRDLKVFGNFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYILSLEELVNGMDMENVLLGLFSTIHDSIQYVQKNAGKLTTTIGKLCTLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDTLCWNGQELVERYSQEPVVSQIIDKLKHINQLLRTMS input pdb
Peptide sequence	CAGAYITFQDIK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	40.8954	6.21097	29.4546	254
cluster_2.pdb ( medoid)	14.8249	6.94775	29.7136	103
cluster_3.pdb ( medoid)	13.3377	10.5716	41.5032	141
cluster_4.pdb ( medoid)	11.0475	10.5001	30.6217	116
cluster_5.pdb ( medoid)	8.70046	13.5625	37.3475	118
cluster_6.pdb ( medoid)	8.156	7.23394	17.0141	59
cluster_7.pdb ( medoid)	7.94767	7.04609	18.9207	56
cluster_8.pdb ( medoid)	7.66511	7.43629	20.1297	57
cluster_9.pdb ( medoid)	4.15795	13.7087	39.6335	57
cluster_10.pdb ( medoid)	2.76177	14.1214	42.0405	39