CABS-dock: 338e61f1a655009

Project name: 338e61f1a655009

Status: done

submitted: 2026-05-08 07:36:17, status changed: 2026-05-08 23:37:34

Project settings

Protein sequence(s)	SSLLTEYGNDNICRVLALDGGGAKGFYTLGVLKEIEAMLGCPLYKRFDLVFGTSTGAIIAALIALGYEVDQIHALYTEHVPRVMSSRSAAARTMALQDLAKEVFQDKTFEDVLMGIGIVATRWMTERPMIFKGNVSPGFGVSIADAVQASCSAYPFFERKVIVTAAGDKVELIDGGYCANNPTLFAIADATVALKKDHKDIRVINVGVGIYPEPKPGLLMRIAKKWLAVQLLQKTLEINTQSMDQLRDILFKDIPTIRISDTFERPEMATDLLEYNLDKLNTLRQRGRESFGAREAQLREFLISSLLTEYGNDNICRVLALDGGGAKGFYTLGVLKEIEAMLGCPLYKRFDLVFGTSTGAIIAALIALGYEVDQIHALYTEHVPRVMSSRSAAARTMALQDLAKEVFQDKTFEDVLMGIGIVATRWMTERPMIFKGNVSPGFGVSIADAVQASCSAYPFFERKVIVTAAGDKVELIDGGYCANNPTLFAIADATVALKKDHKDIRVINVGVGIYPEPKPGLLMRIAKKWLAVQLLQKTLEINTQSMDQLRDILFKDIPTIRISDTFERPEMATDLLEYNLDKLNTLRQRGRESFGAREAQLREFLI input pdb
Peptide sequence	MSKYIAEAIIKR
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	129.28	0.773513	3.21245	100
cluster_2.pdb ( medoid)	33.1799	3.01387	23.5728	100
cluster_3.pdb ( medoid)	17.6511	5.09883	32.6493	90
cluster_4.pdb ( medoid)	17.2092	10.8663	49.0593	187
cluster_5.pdb ( medoid)	9.46353	17.9637	49.959	170
cluster_6.pdb ( medoid)	8.60285	7.90436	27.7143	68
cluster_7.pdb ( medoid)	6.37294	12.71	44.6168	81
cluster_8.pdb ( medoid)	6.17992	16.1814	34.2788	100
cluster_9.pdb ( medoid)	5.71368	10.1511	26.5202	58
cluster_10.pdb ( medoid)	5.57683	8.24842	21.97	46