CABS-dock: 338fa2a078df741

Project name: 338fa2a078df741

Status: done

submitted: 2026-06-23 21:35:42, status changed: 2026-06-23 23:21:49

Project settings

Protein sequence(s)	AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV input pdb
Peptide sequence	DWVGW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	82.9547	1.2537	10.5287	104
cluster_2.pdb ( medoid)	41.032	1.73035	12.1348	71
cluster_3.pdb ( medoid)	39.3301	2.21204	6.41081	87
cluster_4.pdb ( medoid)	38.4724	2.75522	21.6511	106
cluster_5.pdb ( medoid)	36.5501	3.22844	21.1153	118
cluster_6.pdb ( medoid)	26.9296	5.90429	21.723	159
cluster_7.pdb ( medoid)	13.5776	4.12443	12.71	56
cluster_8.pdb ( medoid)	12.8579	9.25498	27.4104	119
cluster_9.pdb ( medoid)	9.42745	9.75874	27.2364	92
cluster_10.pdb ( medoid)	8.72579	10.0851	25.778	88