CABS-dock: 340990576a6dace

Project name: 340990576a6dace

Status: done

submitted: 2026-03-08 14:16:47, status changed: 2026-03-08 16:25:43

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	VQVFGLNNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	58.9201	3.15682	8.54533	186
cluster_2.pdb ( medoid)	57.0203	2.1922	8.24949	125
cluster_3.pdb ( medoid)	51.6073	2.51903	18.9754	130
cluster_4.pdb ( medoid)	35.2484	1.87243	6.73149	66
cluster_5.pdb ( medoid)	22.3206	6.40665	18.0806	143
cluster_6.pdb ( medoid)	13.3195	6.90718	19.0919	92
cluster_7.pdb ( medoid)	12.995	4.77108	16.1176	62
cluster_8.pdb ( medoid)	11.9851	5.59029	28.1834	67
cluster_9.pdb ( medoid)	7.06984	13.2959	30.4269	94
cluster_10.pdb ( medoid)	2.41569	14.4886	28.5884	35