CABS-dock: TAT-NTS

Project name: TAT-NTS

Status: done

submitted: 2025-05-19 18:16:01, status changed: 2025-05-20 01:33:45

Project settings

Protein sequence(s)	DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLILE input pdb
Peptide sequence	YGRKKRRQRRRRSFPHLRRVF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHHCHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.6704	2.36698	4.9179	101
cluster_2.pdb ( medoid)	36.5452	3.5846	11.6025	131
cluster_3.pdb ( medoid)	27.9608	4.25596	11.0123	119
cluster_4.pdb ( medoid)	20.642	6.0556	37.0026	125
cluster_5.pdb ( medoid)	20.2055	4.50372	18.9637	91
cluster_6.pdb ( medoid)	11.8399	11.0643	40.1727	131
cluster_7.pdb ( medoid)	10.2675	5.3567	12.0289	55
cluster_8.pdb ( medoid)	7.85106	12.9919	30.2022	102
cluster_9.pdb ( medoid)	7.07923	12.1482	45.2358	86
cluster_10.pdb ( medoid)	5.47264	10.7809	23.5724	59