CABS-dock: 344f522d4effb2c

Project name: 344f522d4effb2c

Status: done

submitted: 2026-06-10 14:02:19, status changed: 2026-06-10 14:14:00

Project settings

Protein sequence(s)	GIDLKI input pdb
Peptide sequence	GIDLKI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.0037	5.60995	14.485	101
cluster_2.pdb ( medoid)	15.679	7.1433	17.8563	112
cluster_3.pdb ( medoid)	15.1532	8.38107	25.4879	127
cluster_4.pdb ( medoid)	11.152	8.15999	22.7346	91
cluster_5.pdb ( medoid)	8.79819	10.2294	25.7234	90
cluster_6.pdb ( medoid)	7.66923	9.77933	19.6527	75
cluster_7.pdb ( medoid)	7.32886	8.59615	23.8901	63
cluster_8.pdb ( medoid)	6.29391	9.37414	23.3111	59
cluster_9.pdb ( medoid)	4.89654	12.0493	28.4871	59
cluster_10.pdb ( medoid)	4.51748	11.9536	25.6015	54