CABS-dock: 3499683382d432e

Project name: 3499683382d432e

Status: done

submitted: 2026-01-12 17:41:58, status changed: 2026-01-13 06:53:48

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	LVKSDSDDLKLATGNIAMTDVKHAY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHCCCCCCCCEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.6839	5.01833	22.4043	159
cluster_2.pdb ( medoid)	16.5859	5.18512	32.3518	86
cluster_3.pdb ( medoid)	12.6358	12.1085	29.2632	153
cluster_4.pdb ( medoid)	11.7118	9.30685	25.0878	109
cluster_5.pdb ( medoid)	6.55009	8.85484	29.6625	58
cluster_6.pdb ( medoid)	6.32133	8.7007	17.6088	55
cluster_7.pdb ( medoid)	5.89241	11.3706	37.5003	67
cluster_8.pdb ( medoid)	3.97427	11.0712	34.9641	44
cluster_9.pdb ( medoid)	2.70734	11.8197	29.5838	32
cluster_10.pdb ( medoid)	2.65072	14.713	26.7845	39