CABS-dock: elms

Project name: elms

Status: done

submitted: 2026-02-19 16:22:34, status changed: 2026-02-20 01:27:25

Project settings

Protein sequence(s)	VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKPARPPKPRPRRVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKK input pdb
Peptide sequence	PVPGPR
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	45.7426	3.19177	13.8086	146
cluster_2.pdb ( medoid)	24.3894	7.66726	26.6702	187
cluster_3.pdb ( medoid)	21.788	5.55351	12.7736	121
cluster_4.pdb ( medoid)	20.9046	6.88843	22.6782	144
cluster_5.pdb ( medoid)	12.8246	9.20108	27.9426	118
cluster_6.pdb ( medoid)	10.1878	4.61335	30.1214	47
cluster_7.pdb ( medoid)	9.99143	6.20532	32.1646	62
cluster_8.pdb ( medoid)	9.85347	8.42343	28.0915	83
cluster_9.pdb ( medoid)	5.99878	10.002	27.7117	60
cluster_10.pdb ( medoid)	5.55754	5.75795	10.5665	32