CABS-dock: 367a0d35fbf4bcb

Project name: 367a0d35fbf4bcb

Status: done

submitted: 2026-03-22 21:57:27, status changed: 2026-03-23 06:11:36

Project settings

Protein sequence(s)	ERKAAERVRRLREEQQRERLRQVSRILRKAAAERSAEEGRLLAESADLVTELQGRSRRREGLKRRQEEVCDDPEELRGKVRELASAVRNAKYLVVYTGAGISTAASIPDYDLSEAEPTLTHMSITRLHEQKLVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCVPNREYVRVFDVTERTALHRHQTGRTCHKCGTQLRDTIVHFGERGTLGQPLNWEAATEAASRADTILCLGSSLKVLKKYPRLWCMTKPPSRRPKLYIVNLQWTPKDDWAALKLHGKCDDVMRLLMAELGLEIPAYSRWQDPIFSLATPLRAGEEGSHSRKSLCR input pdb
Peptide sequence	ARDAILDALENLTAEELKKFKLKLLSVPL
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHCCHHHHHHHCHHHHCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.7191	2.66874	15.9048	106
cluster_2.pdb ( medoid)	20.6539	5.61638	27.0368	116
cluster_3.pdb ( medoid)	20.0819	5.87594	18.0549	118
cluster_4.pdb ( medoid)	13.2593	10.1815	26.0393	135
cluster_5.pdb ( medoid)	13.1898	6.67185	21.793	88
cluster_6.pdb ( medoid)	10.1501	11.6255	30.3045	118
cluster_7.pdb ( medoid)	9.46069	9.40735	26.82	89
cluster_8.pdb ( medoid)	7.07517	18.5155	37.8082	131
cluster_9.pdb ( medoid)	6.86134	10.9308	40.9194	75
cluster_10.pdb ( medoid)	3.36546	7.13126	24.8781	24