CABS-dock: RecA-Cs9

Project name: RecA-Cs9

Status: done

submitted: 2026-01-10 14:54:10, status changed: 2026-01-10 18:08:45

Project settings

Protein sequence(s)	EGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVVIRNGDWL input pdb
Peptide sequence	KVAEAKIQILHQHGNKV
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.5411	2.64039	5.46063	78
cluster_2.pdb ( medoid)	27.6766	5.88945	22.7854	163
cluster_3.pdb ( medoid)	24.3655	4.4325	27.2324	108
cluster_4.pdb ( medoid)	16.557	9.30118	35.5785	154
cluster_5.pdb ( medoid)	14.7571	11.3166	37.0819	167
cluster_6.pdb ( medoid)	10.7641	11.2411	32.3975	121
cluster_7.pdb ( medoid)	8.13358	6.5162	23.0399	53
cluster_8.pdb ( medoid)	7.39826	8.92102	24.3588	66
cluster_9.pdb ( medoid)	4.17755	13.405	34.4367	56
cluster_10.pdb ( medoid)	2.3069	14.7384	26.4441	34