CABS-dock: 378c4d804f5a70f

Project name: 378c4d804f5a70f

Status: done

submitted: 2026-02-27 02:24:43, status changed: 2026-02-27 07:35:38

Project settings

Protein sequence(s)

NIVLTQSPVSLAVSLGQRATISCRASKSVSTSGYSYMHWYQQKPGQPPRLLLYLGSNLESGVPARFSGSGSGTDFTLNIPVEEEDAATYYCQHIRELTRSFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN input pdb

Peptide sequence

CQLINTNGSWHIC

Simulation mc cycles

Peptide secondary structure psipred

CCEECCCCCEEEC

Contact information

411:SC B 423:SC B 3.8 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.0041	3.28083	33.4331	105
cluster_2.pdb ( medoid)	21.7036	4.56145	15.9686	99
cluster_3.pdb ( medoid)	18.9125	5.28751	13.6459	100
cluster_4.pdb ( medoid)	14.9523	6.42044	26.0292	96
cluster_5.pdb ( medoid)	14.351	4.87769	26.6378	70
cluster_6.pdb ( medoid)	14.3145	8.24338	24.9115	118
cluster_7.pdb ( medoid)	13.1464	8.1391	21.876	107
cluster_8.pdb ( medoid)	12.6777	15.0658	30.6518	191
cluster_9.pdb ( medoid)	7.88827	9.50779	25.4739	75
cluster_10.pdb ( medoid)	6.88042	5.66826	18.9287	39