CABS-dock: 1M17-GPVGPSGPPGIP

Project name: 1M17-GPVGPSGPPGIP

Status: done

submitted: 2025-08-24 09:07:31, status changed: 2025-08-24 14:59:15

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	GPVGPSGPPGIP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	65.7377	1.58204	23.2935	104
cluster_2.pdb ( medoid)	21.2945	6.85624	25.1551	146
cluster_3.pdb ( medoid)	12.8374	11.4509	41.6368	147
cluster_4.pdb ( medoid)	11.3362	11.8206	34.5791	134
cluster_5.pdb ( medoid)	7.22673	14.6678	58.7796	106
cluster_6.pdb ( medoid)	7.19791	16.8104	45.2368	121
cluster_7.pdb ( medoid)	6.56438	10.2066	22.7754	67
cluster_8.pdb ( medoid)	4.92587	9.94747	24.124	49
cluster_9.pdb ( medoid)	4.81554	10.1754	19.8994	49
cluster_10.pdb ( medoid)	3.87011	19.8961	47.6655	77