CABS-dock: 37d166d748f28ea

Project name: 37d166d748f28ea

Status: done

submitted: 2026-01-16 18:24:35, status changed: 2026-01-17 02:48:24

Project settings

Protein sequence(s)	HQPGENCQNKCGNITIEYPFGISSGCYYPGNESFSITCKEDRPHVLSDIEVANFNHSGQLQVLLNRSSTCYDEQGKKTEEDSSFTLENLSLSANNKLTAVGCNALSLLDTFGMQNYSTACLSLCDSPPEADGECNGRGCCRVDVSAPLDSYTFETTSGRIKHMTSFHDFSPCTYAFLVEDDKFNFSSTEDLLNLRNVMRFPVLLDWSVGNQTCEQVGSTSICGGNSTCLDSTPRNGYICRCNEGFDGNPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYCKCQSGYRLDTTTMSCKRKEF input pdb
Peptide sequence	GENQKPMFELAEGATLKNVNLGENE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.1761	4.92221	29.2513	119
cluster_2.pdb ( medoid)	18.6809	7.60135	31.6263	142
cluster_3.pdb ( medoid)	17.0756	11.0684	31.1535	189
cluster_4.pdb ( medoid)	15.6142	3.77862	9.40493	59
cluster_5.pdb ( medoid)	12.6601	10.8214	44.3005	137
cluster_6.pdb ( medoid)	9.69027	12.1772	23.6297	118
cluster_7.pdb ( medoid)	5.59219	15.5574	35.9837	87
cluster_8.pdb ( medoid)	4.9651	8.45904	26.8645	42
cluster_9.pdb ( medoid)	4.87708	9.43188	25.6028	46
cluster_10.pdb ( medoid)	2.38897	25.534	58.1021	61