CABS-dock: tempp

Project name: tempp

Status: done

submitted: 2026-02-14 07:05:43, status changed: 2026-02-14 17:16:48

Project settings

Protein sequence(s)	GFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ input pdb
Peptide sequence	MNFGAFSINP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.3252	4.59112	17.8507	153
cluster_2.pdb ( medoid)	31.857	5.52468	37.7757	176
cluster_3.pdb ( medoid)	28.0374	6.63399	47.036	186
cluster_4.pdb ( medoid)	22.2425	5.12532	46.061	114
cluster_5.pdb ( medoid)	15.868	7.12124	30.7414	113
cluster_6.pdb ( medoid)	11.8428	7.76843	34.4895	92
cluster_7.pdb ( medoid)	8.7222	7.22295	26.4622	63
cluster_8.pdb ( medoid)	4.05259	12.3378	31.7462	50
cluster_9.pdb ( medoid)	3.30952	8.46044	17.3294	28
cluster_10.pdb ( medoid)	1.41685	17.6448	38.7213	25