CABS-dock: Rank

Project name: Rank_03

Status: done

submitted: 2026-04-04 14:09:56, status changed: 2026-04-04 18:26:14

Project settings

Protein sequence(s)	GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	CPGQGWGSIC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.6335	6.18163	19.0982	245
cluster_2.pdb ( medoid)	32.0739	4.1155	19.8305	132
cluster_3.pdb ( medoid)	24.6266	4.83217	30.1229	119
cluster_4.pdb ( medoid)	14.124	6.30134	19.4211	89
cluster_5.pdb ( medoid)	8.58473	14.2113	43.3899	122
cluster_6.pdb ( medoid)	8.50056	9.64643	38.4691	82
cluster_7.pdb ( medoid)	4.42593	14.6862	38.0136	65
cluster_8.pdb ( medoid)	3.21475	21.7746	46.2836	70
cluster_9.pdb ( medoid)	2.7831	15.8097	32.4325	44
cluster_10.pdb ( medoid)	2.69968	11.8533	32.368	32