CABS-dock: 3a008e7b73da618

Project name: 3a008e7b73da618

Status: done

submitted: 2026-07-15 12:00:30, status changed: 2026-07-15 16:27:51

Project settings

Protein sequence(s)	GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLEVAILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRIS input pdb
Peptide sequence	LCTWLLK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	62.7938	3.2328	24.3891	203
cluster_2.pdb ( medoid)	21.8246	6.9188	28.0785	151
cluster_3.pdb ( medoid)	21.5315	6.26989	34.1172	135
cluster_4.pdb ( medoid)	16.5198	9.32215	23.8657	154
cluster_5.pdb ( medoid)	9.86615	8.10853	22.3292	80
cluster_6.pdb ( medoid)	7.18178	9.74689	23.0146	70
cluster_7.pdb ( medoid)	5.91147	10.3189	26.4553	61
cluster_8.pdb ( medoid)	4.35709	11.246	26.068	49
cluster_9.pdb ( medoid)	3.852	11.6822	27.3767	45
cluster_10.pdb ( medoid)	3.43851	15.1228	35.5165	52