CABS-dock: 3ac3ae85e64056

Project name: 3ac3ae85e64056

Status: done

submitted: 2026-07-24 01:11:13, status changed: 2026-07-24 04:20:21

Project settings

Protein sequence(s)	EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSASMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANNLDATELSIRKAFITSTRQIVRDMKDQMSASS input pdb
Peptide sequence	HGWFRHGDHWRL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	87.6242	0.833104	7.07696	73
cluster_2.pdb ( medoid)	30.776	6.27111	30.3848	193
cluster_3.pdb ( medoid)	22.5674	11.2109	42.8255	253
cluster_4.pdb ( medoid)	20.3159	5.80825	42.7567	118
cluster_5.pdb ( medoid)	13.9413	6.67084	17.3343	93
cluster_6.pdb ( medoid)	10.7343	6.42799	17.3726	69
cluster_7.pdb ( medoid)	9.20423	9.56082	34.1622	88
cluster_8.pdb ( medoid)	8.25083	6.7872	19.7958	56
cluster_9.pdb ( medoid)	4.82521	6.63184	18.4522	32
cluster_10.pdb ( medoid)	3.20877	7.79116	22.8635	25